species:   Clros
pid:       PID1839
parent:    cro-mir-5
paralog:   
locus:     CADEHS020000007.2:955011-955089
matures:   ['UUGCAAUGAUUUGCAUUUCGC', 'GAAAUGCAAGUCAUUGUAAAA']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000007.2:955011-955089

4 out of bounds
13 alignments
13 proper strand
13 stranded perfect matches

***********************                                 ***********************
CCGAAAUGCAAGUCAUUGUAAAAUAUUAUUACAUCGAAAUACACUUUGCAAUGAUAUUUUGCAAUGAUUUGCAUUUCGC
.(((((((((((((((((((((((((((((.((.............)).))))))))))))))))))))))))))))).
----------------------------------------------------------UUGCAAUGAUUUGCAUUUCGC l=21 a=12 c
--GAAAUGCAAGUCAUUGUAAAA-------------------------------------------------------- l=21 a=0 c*
----------------------------------------------------------UUGCAAUGAUUUGCAUUUCGC l=21 a=12 ma
--GAAAUGCAAGUCAUUGUAAAA-------------------------------------------------------- l=21 a=0 ma*

-----------------------------------------------------------UGCAAUGAUUUGCAUUUCGC l=20 a=1 
----------------------------------------------------------UUGCAAUGAUUUGCAUUUCGC l=21 a=12 (c,ma)

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
